Muscle

From CLAB

Jump to: navigation, search

Muscle Muscle is public domain multiple alignment software for protein and nucleotide sequences. MUSCLE stands for multiple sequence comparison by log-expectation.

  • biobase.ist.unomaha.edu (3.7)
  • phylogeny.ist.unomaha.edu (3.7)
  • klab.ist.unomaha.edu (3.7)

[edit] Installation

1. Download version 3.7 from here.
2. cp muscle3.7_src.tar.gz muscle3.7_src.tar (as it's not really a .tar.gz but a .tar)
3. mkdir muscle
4. mv muscle3.7_src.tar muscle
5. cd muscle
6. tar xvf muscle3.7_src.tar
7. make
8. mkdir /usr/local/muscle
9. chmod 755 muscle
10.cp muscle /usr/local/muscle/
11. Add the /usr/local/muscle/ to the environment variable PATH

Retrieved from "http://clab.ist.unomaha.edu/CLAB/index.php/Muscle"