Software

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This is a short list of some of our more popular tools. Others can be found by clicking on the "Tools" Category on the bottom of this page, and on the GSAF wiki.

All software is open source unless otherwise noted.

[edit] General Software

  • Web Servers: Apache
  • Web scripting languages: PHP, Perl
  • Wiki Technology and wiki syntax
  • SQL and DBMS
  • Request Tracker (RT) v3.6.3 - Issue tracking for customer support and internal development.
  • Version Control Subversion (SVN) - source code, configuration repository.

   We can provide you HOW-TOs/tutorials regarding these software, For additional Open Source software(s), please contact us.

[edit] Bioinformatics Software

  • Supported at GSAF
    • Accelrys GCG - Commercial product which includes SeqLab (X Windows) and SeqWeb (web browser based). We host, administer and manage this application package and instruct users at UNMC in its use.
    • Vector NTI - Commercial product by invitrogen for sequence analysis and data management. We assist users at UNMC in getting licenses for this software and provide instruction.
  • wEMBOSS - a web interface to the popular EMBOSS software package for biological sequence analysis. (Support plan under development.)
  • BioPerl - Perl toolkit used for a broad spectrum of bioinformatics application.
  • GBrowse - Visualizes genome annotation. The AJAX version is especially interesting.
  • NCBI BLAST - Basic Local Alignment Search Tool
  • Misc software in our SVN repository.
Retrieved from "http://clab.ist.unomaha.edu/CLAB/index.php/Software"
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