SolrGene

From CLAB

SolrGene is some software and Solr definition files I've written so you can take a BioPerl Bio::Seq object and transform it into an XML file for indexing in Solr. --Jhannah 09:58, 19 September 2007 (CDT)

This project was launched as RT11.

Demo server: http://clab.ist.unomaha.edu/CLAB/index.php/Solr

[edit] Source code

• Browse: https://clabsvn.ist.unomaha.edu/anonsvn/CLAB/SolrGene/
• svn checkout https://clabsvn.ist.unomaha.edu/anonsvn/CLAB/SolrGene

[edit] Reference materials

• This bioperl-l thread is a very helpful discussion of word/phrase matching in messy biochemistry data.
  • PerlMol - Perl Modules for Molecular Chemistry
  • InChI - International Union of Pure and Applied Chimstry (IUPAC) International Chemical Identifier
  • OpenBabel
  • NLP - Natural Language Processing
  • Dozens of chemistry modules on CPAN
  • Regexp::List - Another Perl module

Kiran suggested lookup at Stopword list, stemming algorithms

Links to Medical Subject Heading: How they have done it
1. http://www.nlm.nih.gov/mesh/meshhome.html
or for more info
2. http://search.nlm.nih.gov/homepage2/query?PARAMETER=mesh&imageField.x=0&imageField.y=0&FUNCTION=search&MAX=250&DISAMBIGUATION=true&SERVER2=server2&SERVER1=server1