| Software
| Availability (Version)
| Usage Type
(All Users/Admin Only)
|
| AffyMAPSDetector
|
- biobase.ist.unomaha.edu (Version 1)
| All Users
|
| BioPerl
|
- biobase.ist.unomaha.edu (1.5.2)
- biodev.ist.unomaha.edu (1.5.2)
- phylogeny.ist.unomaha.edu (1.4)
- klab.ist.unomaha.edu (bioperl-live)
| All Users
|
| Biopython
| Template:Avail Biopython
| All Users
|
| Bowtie
|
- klab.ist.unomaha.edu 0.11.3
| All Users
|
| BRB-ArrayTools
|
- research.ist.unomaha.edu (3.8.0)
| All Users
|
| CLAB BioDB
|
- klab.ist.unomaha.edu:/clab_biodb
| All Users
|
| Clustal
|
- biobase.ist.unomaha.edu (1.83)
- phylogeny.ist.unomaha.edu (1.83)
- klab.ist.unomaha.edu (1.83)
| All Users
|
| DeconMSn
|
- winbioshare (137.197.64.166) (2.1)
| All Users
|
| Decon2LS
|
- winbioshare (137.197.64.166) (1.0.2964)
| All Users
|
| EMBOSS
|
- klab.ist.unomaha.edu (6.0.1)
- biobase.ist.unomaha.edu (?)
- phylogeny.ist.unomaha.edu (6.1.0)
| All Users
|
| Erlang
|
- biobase.ist.unomaha.edu (5.5.5)
- phylogeny.ist.unomaha.edu (5.5.5)
- klab.ist.unomaha.edu (5.5.5)
- Blackforest Cluster (5.5.5)
| All Users
|
| FASTX-Toolkit
|
- klab.ist.unomaha.edu v0.0.10
| All Users
|
| Genbank
|
- klab.ist.unomaha.edu:/clab_bdb/genbank
| All Users
|
| glimmer
|
- biobase.ist.unomaha.edu (3.02)
- phylogeny.ist.unomaha.edu (3.02)
- klab.ist.unomaha.edu (3.02)
| All Users
|
| GPM
|
- DRC3020-foxlab.unmc.medforest.org (20060516)
| Fox Lab - UNMC
|
| Graclus
|
- biobase.ist.unomaha.edu (1.2)
- phylogeny.ist.unomaha.edu (1.2)
- klab.ist.unomaha.edu (1.2)
| All Users
|
| Hawkeye
|
- biobase.ist.unomaha.edu (2.0.5)
- phylogeny.ist.unomaha.edu (2.0.5)
- klab.ist.unomaha.edu (2.0.5)
| All Users
|
| Inspect
| Template:Avail Inspect
| All Users
|
| Jim Kent (UCSC) software
|
| All Users
|
| Mascot
|
- mascot.ist.unomaha.edu (2.2.01 March 2007)
- DRC3066-Mascot.unmc.medforest.org (For Proteomics Lab Use only at UNMC)
| PCSF + MSPCF
|
| MAVID
| Template:Avail MAVID
| All Users
|
| MaxQuant
|
- DRC3066MaxQuant.unmc.medforest.org (For Proteomics Lab Use only at UNMC)
| MSPCF + Proteomics Lab
|
| MEME Suite
|
- phylogeny.ist.unomaha.edu (4.1.0)
| All Users
|
| mfold
|
- biobase.ist.unomaha.edu (3.4)
- phylogeny.ist.unomaha.edu (3.4)
- klab.ist.unomaha.edu (3.4)
| All Users
|
| MIR
|
| All Users
|
| miRGator
|
| All Users
|
| mpiBLAST
|
- sapling cluster nodes (1.5.0-pio)
| All Users
|
| MUMmer
| Template:Avail MUMmer
| All Users
|
| Muscle
|
- biobase.ist.unomaha.edu (3.7)
- phylogeny.ist.unomaha.edu (3.7)
- klab.ist.unomaha.edu (3.7)
| All Users
|
| OMSSA
|
- winbioshare (137.197.64.166)
| All Users
|
| paml
| Template:Avail paml
| All Users
|
| PHYLIP
|
- phylogeny.ist.unomaha.edu
- klab.ist.unomaha.edu (3.68)
| All Users
|
| QTL Reaper
|
| All Users
|
| R_(programming_language)
|
- biobase.ist.unomaha.edu (2.6.2)
- klab.ist.unomaha.edu (2.6.2)
| All Users
|
| reputer
|
- biobase.ist.unomaha.edu (2.74)
- klab.ist.unomaha.edu (2.74)
- phylogeny.ist.unomaha.edu (2.74)
| All Users
|
| Request_Tracker_(RT)
|
- klab.ist.unomaha.edu (rt3)
| All Users
|
| RiboSW
|
| All Users
|
| SeqLab
|
| All Users
|
| signalP
|
- biobase.ist.unomaha.edu (3.0)
- phylogeny.ist.unomaha.edu (3.0)
- klab.ist.unomaha.edu (3.0)
| All Users
|
| SigTerms
|
- research.ist.unomaha.edu (1.0)
| All Users
|
| TIGR_MeV
|
- biobase.ist.unomaha.edu (4.4)
- phylogeny.ist.unomaha.edu (4.4)
- klab.ist.unomaha.edu (4.4)
| All Users
|
| TopKCEMC
|
- biobase.ist.unomaha.edu (1.1)
- phylogeny.ist.unomaha.edu (1.1)
- klab.ist.unomaha.edu (1.1)
| All Users
|
| Vector NTI
| Template:Avail Vector NTI
| All Users
|
| WebGUI
|
- biodev.ist.unomaha.edu (Europa)
| All Users
|
| weka
|
- biobase.ist.unomaha.edu (3-6-1)
- phylogeny.ist.unomaha.edu (3-6-1)
- klab.ist.unomaha.edu (3-6-1)
| All Users
|
| X! Tandem
| Template:Avail X!Tandem
| All Users
|
