TopKCEMC

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TopKCEMC is a rank aggregation tool for integrating data from multiple sources based on the ranks from individual lists.

[edit] Availability

Version 1.1:

  • biobase.ist.unomaha.edu
  • klab.ist.unomaha.edu
  • phylogeny.ist.unomaha.edu

[edit] Installation

In a Linux box, do the following to install TopKCEMC: 

1. Make sure the R package is installed. 
2. Download the software and extract to a directory called TopKCEMC within /usr/local/
3. cd /usr/local/TopKCEMC/ ; chmod o+r *
4. As root, run this command to create the TopK.so file: R CMD SHLIB TopK.c
5. chmod o+r *

[edit] How to run

In a Linux box, do the following to run the program: 

1. Make a copy of the application to your home directory (e.g.  cp -r /usr/local/TopKCEMC/ /home/username/ ). 
   Replace username with actual username.
2. Start R
3. In the R prompt, type: setwd("/home/username/TopKCEMC/")
   Replace username with actual username.
4. load TopKCEMC
   >source("TopKCEMC.R")
   if you are under Unix or Linux, you can type
   >dyn.load("TopK.so")
5. Call the program by
   >ExcCEMC(para="para.txt")
6. Look at this URL to determine how to configure the parameter files and how to format the input files:
Retrieved from "http://clab.ist.unomaha.edu/CLAB/index.php/TopKCEMC"